[Biojava-l] Newick Tree Visualization

[Marc Colosimo]

Mara,

Or TreeViewJ <http://treeviewj.sourceforge.net/Site/TreeViewJ.html>  
which handles PhyloXML, nwk and extended nwk. It also has a light  
weight library that does some of the things found in PAL (found in   
subversion source).

Marc
On Oct 30, 2009, at 12:00 PM, biojava-l-request at lists.open-bio.org  
wrote:
> Date: Fri, 30 Oct 2009 11:00:02 -0400
> From: Hilmar Lapp <hlapp at gmx.net>
> Subject: Re: [Biojava-l] Newick Tree Visualization
> To: Mara Axiom <mara.axiom at gmail.com>
> Cc: biojava-l at lists.open-bio.org
> Message-ID: <CBF42F90-076C-484C-A450-C5DCCD137727 at gmx.net>
> Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes
>
> Mara - have you looked at PhyloWidget? (http://www.phylowidget.org)
>
> 	-hilmar
>
> On Oct 30, 2009, at 10:34 AM, Mara Axiom wrote:
>
>> Hello,
>>
>> I'm new to BioJava. I have copied the code "*getTreeAsJGraphT
>> (Weighted
>> Tree)*" from http://biojava.org/wiki/BioJava:PhyloSOC07_doc which
>> basically
>> parses a Newick string, and displays the result in text using
>> JGraphT. It
>> works! My question is how to visualize the result in form of a
>> graphic tree,
>> not text? Is there any way to do this in BioJava? Is there any
>> source code
>> or example that can help me? Any help is appreciated.
>>
>> I was looking at JGraph, but I'm not sure if it does what I want. If
>> it
>> does, I don't know where to start.
>>
>> Mara
>>
>> P.S. I know there are tools which do this, but I need to create my
>> own code
>> for something specific I want.
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>>
>