[Biojava-l] Reading meta data in PDB file?

[Andreas Prlic]

Hi Ashika,

actually some of the data is available via the Compound class, but for
the other parts of your query that is not there you would need to add
additional methods to the parser. if you have a patch, would be great
if you could post it to the list...

Andreas



2009/3/12 Ashika Umanga Umagiliya <aumanga at biggjapan.com>:
> I assume there is no way to read these information and I have to modify the
> PDB parser ?
>
>
> Ashika Umanga Umagiliya wrote:
>>
>> Greetings all,
>> I want to read following information.I noticed that most of them are
>> stored under REMARK tag in PDB.Can I read them using BioJava PDB Parser?
>>
>> Thanks in Advance,
>> Umanga.
>> ------------------------------
>>
>> Unit Cell:
>> a,b,c,alpha,beta,gamma values (I assume they are stored in CRYST1 tab? )
>>
>> Molecular Description Asymetric Unit:
>> Polymer , Molecule , Chains
>>
>> Classification
>>
>> Source:
>> Polymer,Scientific Name
>>
>> Ligand Chemical Component :
>> Identifier , Name , Formula
>>
>> Diffraction Detector:
>> Detector,Type,Collection Data
>>
>> Diffration Radiation:
>> Monochromator,Diffraction Protocol,Wavelength,Wavelenth List
>>
>
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