[Biojava-l] Simple Question - Creating a Java object (some form of Tree) from a Newick format file

[Richard Holland]

Biojava has a parser which understands Nexus files, including the
embedded Newick tree data. You could probably extract and modify the
Newick bits to run standalone. The Nexus code is written up here:

http://biojava.org/wiki/BioJava:PhyloSOC07_doc
http://www.biojava.org/docs/api/org/biojavax/bio/phylo/io/nexus/package-summary.html
http://www.mail-archive.com/biojava-l@lists.open-bio.org/msg00892.html

cheers,
Richard


On Fri, 2009-06-19 at 18:37 +0100, JP wrote:
> Does anyone know of a tool to create a tree by parsing a Newick Tree format
> file in Java ?
> Is there anything in biojava to read this ?
> 
> Many Thanks
> JP
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-- 
Richard Holland, BSc MBCS
Operations and Delivery Director, Eagle Genomics Ltd
T: +44 (0)1223 654481 ext 3 | E: holland at eaglegenomics.com
http://www.eaglegenomics.com/