[Biojava-l] BioJava and backbone amino acids

[Andreas Prlic]

Hi Michal,

you can get the backbone atoms e.g. by using the StructureTools class:

StructureTools.getBackboneAtomArray(Structure s)

http://www.biojava.org/docs/api/org/biojava/bio/structure/StructureTools.html

Andreas

On Fri, Feb 27, 2009 at 12:05 AM, Michal Lorenc <m.t.lorenc at wp.pl> wrote:
> Hi Andreas,
> Thank you for your email. But how can I find backbone amino acids?
>
> Thank you in advance.
>
> Best regards,
>
> Michal
>
> Andreas Prlic wrote:
>>
>> Hi Michal,
>>
>> You could use the Calc class to calculate all the distances of Atoms
>> that are in proximity of a the ligand.
>>
>> Andreas
>>
>>
>> On Wed, Feb 25, 2009 at 10:30 PM, Michal Lorenc <m.t.lorenc at wp.pl> wrote:
>>>
>>> Dear Andreas,
>>> do you know how it is possible to find backbone amino acids around the
>>> ligand with BioJava or do you know another software?
>>>
>>> Thank you in advance.
>>>
>>> Best regards,
>>>
>>> Michal
>>>
>>
>>
>