[Biojava-l] problem in alignment

Anant Jain anantpossible at gmail.com
Mon Feb 23 09:45:45 UTC 2009


Greeetings all,

                       i am aligning two protein sequences using BLOSUM62
substitution matrix but an runtime error is coming which is " this
tokenization does not contain character ' * ' " some IllegalSymbolException

please suggest me solution or any substitution matrix

or do i have to change my sequence format.

plz rply



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