[Biojava-l] Phylogenetic Trees

[Scooter Willis]

I was looking for Java code to construct a phylogenetic tree from
aligned sequence data. I came across org.biojavax.bio.phylo as an
experimental package in the latest release of BioJava. The docs were
thin and couldn't find any code examples so was wondering if anyone
has used the package with success.

I also couldn't decide if the package is intended to load
pre-constructed trees as Java objects or could be used to construct a
tree from aligned sequence data.

Does anyone know of an accepted Java package for tree construction
besides what is in JalView?

Thanks

Scooter