[Biojava-l] MMCIF parser?

[Paul B]

Thanks, Andreas!

--- On Wed, 4/8/09, Andreas Prlic <andreas at sdsc.edu> wrote:


From: Andreas Prlic <andreas at sdsc.edu>
Subject: Re: [Biojava-l] MMCIF parser?
To: tallpaulinjax at yahoo.com
Cc: "biojava-l at biojava.org" <biojava-l at biojava.org>
Date: Wednesday, April 8, 2009, 4:10 PM


Hi Paul,

The mmcif functionality is new and will be part of the  1.7 release
that will go out next week. In the meanwhile you can use the nightly
build .jars from http://www.spice-3d.org/cruise/ ...

Andreas







On Wed, Apr 8, 2009 at 12:52 PM,  <tallpaulinjax at yahoo.com> wrote:
>
> Hi,
>
> The JAVADOCS located here with a build date of today indicate BioJava supports MMCIF file parsing:
> http://www.spice-3d.org/public-files/javadoc/biojava/overview-summary.html
> As does the Cookbook page here:
> http://biojava.org/wiki/BioJava:CookBook:PDB:mmcif
>
> Yet the (official ?) Javadocs here don't indicate support:
> http://www.biojava.org/docs/api16/index.html
>
> And when I searched in the source code I can not find any mention of the *mmcif*.java files, and the class files don't seem to exist either. To make sure I had the latest build, I re-downloaded the JAR file located here and checked it as well:
> http://www.biojava.org/download/bj16/all/biojava-1.6.1-all.jar
>
> Is MMCIF support from an older version of BioJava that has been deprecated, or from a new version yet to be released?
>
> Thanks,
>
> Paul
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> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
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>

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