[Biojava-l] Getting feature by qualifier_value

[Richard Holland]

Augusto,

If you can adapt Zagato's code to load the sequence object you
require, then you will find the seqfeature_qualifier_value entries are
accessible by iterating over the sequence object's features then
within each feature iterating over the Notes.

cheers,
RIchard

2008/9/11 Zagato <zagato.gekko at gmail.com>:
> The proccess to get an object using hibernate it's something like this:
>
> TestClass // This is the class
> objTestClass // this is the object from the class
>
> @@@@@@@@@@
>
> TestClass objTestClass = null;
> hbn_session.clear();
> Query query = hbn_session.createQuery( "from TestClass where attribute =
> :attribute" );
> query.setParameter("attribute", 55); // Here you set the value for the
> specific where..
> List list = query.list(); // You get the result that match
> if( list.size() == 1 )
>                        objTestClass = (TestClass)list.get(0);
>
> Remenber, you must have the map file in xml to hibernate, i don't remember
> well but in the documentacion from biojava it's a better example...
> (http://www.biojava.org/wiki/BioJava:Cookbook#BioSQL_and_Sequence_Databases)
>
> I hope this helps you.. Bye !!!
>
> Alan Jairo Acosta
>
>
> On Thu, Sep 11, 2008 at 4:54 AM, Augusto Fernandes Vellozo <
> augustovmail-java at yahoo.com.br> wrote:
>
>> Hi all.
>>
>> I don't know very well hibernate, and I am with problems to do one query
>> into database BIOSQL using Biojavax.
>>
>> Given one organism (NVBITaxon), I need to get the feature with one specific
>> value of one property (field value of table SeqFeature_qualifier_value).
>>
>> Please, somebody knows how can i do this?
>>
>> Thanks a lot,
>>
>> --
>> Augusto F. Vellozo
>>
>>
>>
>> --
>> Augusto F. Vellozo
>> _______________________________________________
>> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/biojava-l
>>
>
>
>
> --
> Farewell.
> http://www.youtube.com/zagatogekko
> ruby << __EOF__
>  puts [ 111, 116, 97, 103, 97, 90 ].collect{|v| v.chr}.join.reverse
> __EOF__
> _______________________________________________
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> http://lists.open-bio.org/mailman/listinfo/biojava-l
>



-- 
Richard Holland, BSc
Finance Director, Eagle Genomics Ltd
M: +44 7500 438846 | E: holland at eaglegenomics.com
http://www.eaglegenomics.com/