[Biojava-l] Problem

[Richard Holland]

I'm afraid we can't be much help unless we can see the actual code you
have written to do this job!

cheers,
Richard

On Thu, March 27, 2008 5:46 pm, Saif Ur-Rehman wrote:
>
> Dear All,
>
> I am attempting to split up a Fasta file of an entire genomes amino acid
> sequences into separate files for each individual gene. I am simply
> reading the
> Fasta file of the entire genome as a Sequence Db and then iterating around
> it
> creating a new file for each Sequence and writing it out to that file.
> However
> out of a Fasta file containing 13465 genes only 12945 are written out to
> their
> own individual files. This does not occur in files which lack the
> termination
> symbol i.e do not use the Alphabet ("PROTEIN_TERM"). I was wondering if
> you
> could suggest any reason why this might occur as I am completely
> mystified.
>
> Thanking you in advance,
>
> Saif
>
>
> -------------------------------------------------------------------------------
> Saif Ur-Rehman
> Research Student
> The Centre for Evolution, Genes & Genomics (CEGG)
> Dyers Brae
> School of Biology
> The University of St Andrews
> St Andrews,
> Fife
> Scotland,UK
>
> ------------------------------------------------------------------
> University of St Andrews Webmail: https://webmail.st-andrews.ac.uk
>
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>


-- 
Richard Holland
BioMart (http://www.biomart.org/)
EMBL-EBI
Hinxton, Cambridgeshire CB10 1SD, UK