[Biojava-l] [Biojava-dev] [Fwd: large genbank data]

[Mark Schreiber]

Hi -

Is the code throwing an exception or running out of memory??

Can you send an example program and the problem you encounter to the list.
- Mark

On Thu, May 29, 2008 at 9:53 AM, Rey Vincent Babilonia
<rvincent at asti.dost.gov.ph> wrote:
>
>
> -------- Original Message --------
> Subject: large genbank data
> Date: Wed, 28 May 2008 18:02:48 +0800
> From: Rey Vincent Babilonia <rvincent at asti.dost.gov.ph>
> To: biojava-l at biojava.org
>
> hi,
>
> anybody tried uploading a large genbank data (e.g.
> ftp://bio-mirror.net/biomirror/genbank/gbbct1.seq.gz) to biosql?
> load_seqdatabase.pl of bioperl can do this. i'm switching to biojava and
> it can't read the sequence (maybe because it has 30000+ sequences).
>
> thanks.
>
> --
> /**
>  * @author   Rey Vincent P. Babilonia
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>  * @pgp      0x383454CF <at> pgp.mit.edu
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>  * @division Research and Development Division
>  * @agency   Advanced Science and Technology Institute
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>
>
> --
> /**
>  * @author   Rey Vincent P. Babilonia
>  * @number   +63 2 426 9760 local 1302
>  * @pgp      0x383454CF <at> pgp.mit.edu
>  * @project  Philippine Bioinformatics Solutions
>  * @program  Philippine e-Science Grid
>  * @division Research and Development Division
>  * @agency   Advanced Science and Technology Institute
>  * @url      http://www.psigrid.gov.ph
>  */
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