[Biojava-l] Retrieving Partial gene/CDS information

[Hilmar Lapp]

On Dec 18, 2008, at 12:14 PM, Richard Holland wrote:

> Whilst BioJava supports the < and > annotation, and will correctly  
> load
> these from the file and store them as FuzzyLocations internally,  
> when it
> is asked to write them to BioSQL they are lost. This is BioSQL has no
> way of storing this information.


That's actually not true. BioSQL has the location_qualifier_value  
table for storing this, and the foreign key to term to store the  
location type.

Bioperl-db does indeed lose this information when persisting feature  
locations to BioSQL, but that's Bioperl-db's fault, not BioSQL's.

Or am I missing something?

	-hilmar
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: Hilmar Lapp  -:-  Durham, NC  -:-  hlapp at gmx dot net :
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