[Biojava-l] Retrieving Partial gene/CDS information

[Bandaru, Sandya (NIH/NIAID) [C]]

Hi,

I used BioJava 1.6 to store Genbank sequences into MySQL database, and tried writing out the Sequence. I noticed the feature location is not having '<' or '>' (if is partial gene/CDS). I looked into the documentation of biojavax and didn't find way to get this information.

I found FuzzyLocation in Biojava. I appreciate if you can provide similar feature to get the partial CDS/gene locations.

Thanks to the BioJava team for the good work.

Regards,
Sandya Bandaru
Bioinformatics Software Developer
Bioinformatics and Computational Biosciences Branch (BCBB)
OCICB/OSMO/OD/NIAID/NIH
10401 Fernwood Road
Bethesda, MD 20892

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