[Biojava-l] maximum parsimony search

[Richard Holland]

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There is a class currently only available from the head of CVS - ie. it
is unreleased yet. To get it you'll need to check out the very latest
BioJava source code from CVS.

The JavaDoc for the class is here:

http://www.spice-3d.org/public-files/javadoc/biojava/org/biojavax/bio/phylo/ParsimonyTreeMethod.html

It is designed to take input in the form of blocks of data similar to
what you would find in a Nexus file (the Nexus file parsers elsewhere in
the org/biojavax/bio/phylo package will provide these). However you
could of course create such objects from your own data without needing
to read/write any Nexus files.

cheers,
Richard


Shirley Cohen wrote:
> Hi BioJava People,
> 
> I'm looking for existing code that implements a maximum parsimony  
> search in Java. Does BioJava have this functionality? If so, can you  
> point me to the appropriate classes?
> 
> Thanks,
> 
> Shirley
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biojava-l
> 
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