[Biojava-l] How to read and write a ProfileHMM into file

[Richard Holland]

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Have you tried the classes in org.biojava.bio.program.hmmer ? There is a
parser in there which will read the output from HMMER.

cheers,
Richard

Aulia Rahma Amin wrote:
> How to read and write a ProfileHMM into file?
> I try XMLMarkovModel but I can't cast SimpleMarkovModel into ProfileHMM
> when I read the file.
> 
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