[Biojava-l] pK values

[Mark Schreiber]

Hi -

The values are calculated using the SymbolPropertyTable returned by
ProteinTools.getSymbolPropertyTable(SymbolPropertyTable.PK);

This table gets it's values from the resource file
org/biojava/bio/symbol/ResidueProperties.xml

The pK values were added by david huen (I think).

To read XML sequence files try one of the methods in
RichSequence.IOTools from biojava 1.5 beta.

- Mark

On 10/31/06, Gerster  Sarah <sgerster at student.ethz.ch> wrote:
> Hi!
>
> I want to compute the pI of some sequences. I looked at "IsoelectricPointCalc.java". Where do the values for the pks come from? are they defined as constants somewhere? I couldn't find them... I wanted to see if the values are the same ones than the ones that I am supposed to use.
>
> And another question> reading in sequences from an xml file... Is there something that I can use, or do I have to write it on my own?
>
> Cheers
>
> Sarah
>
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biojava-l
>