[Biojava-l] Creating an alignment object

[Nathan S. Haigh]

I'm new to Java and Biojava, but I've been having a play with writing and
interface and some classes for an app I'd like to write in Java.

The part I'm playing around with at the moment deals with alignments and
groups of alignment positions. What is the easiest/best way to create an
alignment that I can then play around with and generate Locations from? A
self contained working example would be great because as I said, I'm really
new to java!

Cheers
Nath

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Dr. Nathan S. Haigh
Bioinformatics PostDoctoral Research Associate
 
Room B2 211                                            Tel: +44 (0)114 22
20112
Department of Animal and Plant Sciences                Mob: +44 (0)7742 533
569
University of Sheffield                                Fax: +44 (0)114 22
20002
Western Bank                                           Web:
www.bioinf.shef.ac.uk
Sheffield                                      
www.petraea.shef.ac.uk
S10 2TN                                         	
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