[Biojava-l] Alignment Viewer

[mark.schreiber at novartis.com]

Hi -

I don't think there is an alignment viewer officially although I know that 
people have written them. Maybe someone would like to contribute theirs to 
the list??

Can you give more detailed information about your SequenceDB bug? Biojava 
version, example code etc?

Thanks,

- Mark

Mark Schreiber
Research Investigator (Bioinformatics)

Novartis Institute for Tropical Diseases (NITD)
10 Biopolis Road
#05-01 Chromos
Singapore 138670
www.nitd.novartis.com

phone +65 6722 2973
fax  +65 6722 2910





"Anderson Moura da Silva" <anderson.moura at telemar-rj.com.br>
Sent by: biojava-l-bounces at lists.open-bio.org
06/27/2006 07:59 PM

 
        To:     <biojava-l at lists.open-bio.org>
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-l] Alignment Viewer


Hi everyone,

Does BioJava implements a Alignment Panel like SequencePanel? Is it 
possible to put colors in it like ClustalW?
I Used the SequencePanel but not in colors, is it possible to put colors 
on this one?

Another question: The SequenceDB can only store sequences of one type? I'm 
asking it because I tryed to save sequences using ProteinTools, RNATools 
and DNATools on the same SequenceDB and I was not able to get this 
sequences back using the ID of the sequence. Is it wrong to put more than 
one type of sequence on the same SequenceDB?

Thank you a lot

Anderson Moura - Brasil


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