[Biojava-l] blast parser

[Valdemaras Repšys]

Thanks for the help. It really works fine with lazy mode on when parsing
blastpgp output (i tried versions 2.2.14 & 2.2.10).
The thing is I need a psiblast-on-the-web parser, the text output from the
web and command line differs slightly and web output does not parse.
I think I have no choise but to write my own parser..

Valdemaras Repšys

On 7/12/06, mark.schreiber at novartis.com <mark.schreiber at novartis.com >
wrote:
>
> Hi -
>
> Essentially someone needs to do some testing with the new versions of
> blast. If the parser seems to produce the correct results then we can add
> version 2.x.x to the 'certified' list.
>
> As always we need volunteers. Also if people notice it doesn't work then
> perhaps submit a bug report detailing the version etc.
>
> Thanks,
>
> - Mark
>
>
>
>
>
> Dewkid <online1 at dewkid.com>
> Sent by: biojava-l-bounces at lists.open-bio.org
> 07/12/2006 03:24 AM
>
>
>         To:     biojava-l at lists.open-bio.org
>         cc:     (bcc: Mark Schreiber/GP/Novartis)
>         Subject:        Re: [Biojava-l] blast parser
>
>
>
> I'm new to this list, but I also ran into this problem.  The easy
> solution,
> is to call the setModeLazy method in your BlastLikeSaxParser object, and
> it
> will ignore the version.  Near as I can tell, the parser works just fine
> this way.
>
> Still, I'm anxious to see this parser updated to support the newer blast
> versions!
> --
> View this message in context: http://www.nabble.com/blast-parser-tf1924149.html#a5276129
>
> Sent from the BioJava forum at Nabble.com.
>
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biojava-l
>
>
>
> _______________________________________________
> Biojava-l mailing list  -   Biojava-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biojava-l
>