[Biojava-l] Generalized HMM in biojava?

[Matthew Pocock]

If each state emits a fixed number of symbols then you can just do an HMM 
where the emissions are over alpha^length. If you want the symbols to overlap 
then use an order-n distribution. 

Matthew

On Wednesday 11 January 2006 09:37, wendy wong wrote:
> what I mean by Generalized HMM is that each state emits a sequence of
> symbols (fixed length though), which doesn't seen very straight
> forward in biojava?
>
> thanks,
> wendy
>
> On 1/11/06, mark.schreiber at novartis.com <mark.schreiber at novartis.com> wrote:
> > Depending on what you mean by generalized....
> >
> > You can create lots of custom HMM architechtures using the DP packages of
> > biojava.
> >
> > - Mark
> >
> >
> >
> >
> >
> > wendy wong <wendy.wong at gmail.com>
> > Sent by: biojava-l-bounces at portal.open-bio.org
> > 01/11/2006 05:00 AM
> > Please respond to sww8
> >
> >
> >         To:     biojava-l at biojava.org
> >         cc:     (bcc: Mark Schreiber/GP/Novartis)
> >         Subject:        [Biojava-l] Generalized HMM in biojava?
> >
> >
> > Hi,
> >
> > I was wondering if it is possible to use the biojava library to
> > construct a generalized HMM?
> >
> > thanks,
> > Wendy
> >
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