[Biojava-l] Newbie struggling with secondary structure

[Tjaart de Beer]

Hi

Thanks for all the suggstions. Currently I just want to extract the 
secondary structure as specified in the PDB file. I am having trouble 
understanding how to utilize the AminoAcid class (after having looked at 
the source...). Does anyone have an example of extracting the secondary 
structure from a PDB file using the AminoAcid class in Biojava? Or any 
example using the AminoAcid class to extract info from a PDB file?

Any help would be greatly appreciated!

Martin Heusel wrote:
> Hi Tjaart,
> you can use DSSP to determine the secondary structure from a PDB.
> http://swift.cmbi.ru.nl/gv/dssp/
> or maybe better use Christoph's SecondaryStructure_Predictor with biojava
> http://www.charite.de/bioinf/strap/biojavaInAnger_SecondaryStructure_Predictor.html
> bye
> Martin
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l at biojava.org
> http://biojava.org/mailman/listinfo/biojava-l
> 

-- 
Tjaart de Beer


---------
The software required "Windows XP or better" ... so I installed Linux