[Biojava-l] Issues with FlexibleAlignment

[Russ Kepler]

On Friday 25 November 2005 04:39 am, Matthew Pocock wrote:

> This should be returning the symbol AlphabetManager.getGap(), which should
> be the same as EMPTY_ALPHABET.getGap(). Could somebody fix this?

I wouldn't think that a gap symbol would be appropriate for the areas outside 
the sequence to sequence overlap.  Something that displays as a space or 
something would be a lot more appropriate, but my lack of experience in the 
Symbol package prevents me from finding it.