RE: [Biojava-l] RestrictionEnzymeManager REBASE reader bug?

[george waldon]

Of course it's a bug and I reported it a while ago:

Dated from Wed 5/11/2005 11:31 AM
"There is also a bug I found a while ago. In RestrictionEnzymeManager.java, around 2/3 down, put

for (Iterator ii = isoschizomers.iterator(); ii.hasNext();) {
    String isoName = (String) ii.next();
    Object re = nameToEnzyme.get(isoName);
    if(re!=null)
        tempSet.add(re);
}

helps to deal with isoschizomers."

A mean to track bugs would be nice but more important I think would be a searchable mail archive. I remember there is a way to search biojava archive somewhere but I couldn't find it on the biojava web site. Would be nice to have a link on the site.

- George

-----Original Message-----
From: biojava-l-bounces at portal.open-bio.org [mailto:biojava-l-bounces at portal.open-bio.org] On Behalf Of Jesse
Sent: Tuesday, June 21, 2005 6:06 AM
To: biojava-l at biojava.org
Subject: RE: [Biojava-l] RestrictionEnzymeManager REBASE reader bug?

I think I found the problem.

The Restriction Enzyme name (<1>) of an entry can be linked to the
isoschizomers field (<2>) of other entries. So when I remove an entry, I
also have to remove those names in the isoschizomers field of other entries.

So it's not a bug.

- Jesse