[Biojava-l] reading nib sequence files

[mark.schreiber at group.novartis.com]

In short, no.

Do you have a description of the format? It may not be too hard to adapt 
an existing parser.

- Mark





Dan Baggott <dan.baggott.work at gmail.com>
Sent by: biojava-l-bounces at portal.open-bio.org
01/21/2005 07:02 AM
Please respond to baggott2

 
        To:     biojava-l at biojava.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-l] reading nib sequence files


Does anyone hava any java code for reading from .nib nucleotide
sequence files (ie what's used by the UCSC folks)?   I know Jim Kent
et al. have some utilities (I think in C) for reading from nib files
but am wondering about java...

Thanks,

Dan
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