[Biojava-l] Biojava DB

[mark.schreiber at group.novartis.com]

Hi -

You would probably want to use something like BioSQL. There is some 
documentation under the OBDA section of this page 
http://www.biojava.org/docs/bj_in_anger/index.htm

There are some people on the list who are actively working with this. You 
would probably aslo want to look at the BioSQL webpages and mailing list.

- Mark





Ola Spjuth <ola.spjuth at farmbio.uu.se>
Sent by: biojava-l-bounces at portal.open-bio.org
01/11/2005 07:52 PM

 
        To:     biojava-l at biojava.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        [Biojava-l] Biojava DB


Hello,

I am thinking of using BioJava for managing sequences and annotations of
sequences.

BioJava seems to have database support for storing sequences in
relational databases. How developed is the support for storing annotated
sequences? Is there any documentation (other than JavaDoc) on working
with sequences and annotations, and database persistence of these?

Best regards

   .../Ola Spjuth


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