[Biojava-l] location of biojava.jar on a linux system

[Alexandre Dionne-Laporte]

include the full path of the biojava archive in the definition of your
classpath:

#java -cp
/uufs/inscc.utah.edu/common/home/ahammer/ext/xerces.jar:/uufs/inscc.utah.edu/common/home/ahammer/ext/biojava.jar -jar MotifSearch.jar

Alex.

On Fri, 2005-02-11 at 14:02, Andy Hammer wrote:
> I think I am on the same page as everyone here.
> But I still get:
> >java -cp xerces.jar:biojava.jar -jar MotifSearch.jar 
> Exception in thread "main"
> java.lang.NoClassDefFoundError:
> org/biojava/bio/BioException
> 
> More info:
> ahammer at marchingmen2:~/ext> pwd
> /uufs/inscc.utah.edu/common/home/ahammer/ext
> ahammer at marchingmen2:~/ext> 
> ahammer at marchingmen2:~/ext> echo $CLASSPATH
> .:/uufs/inscc.utah.edu/common/home/ahammer/ext/
> ahammer at marchingmen2:~/ext> 
> ahammer at marchingmen2:~/ext> ls -l 
> total 4772
> -rw-r--r--    1 ahammer  gestelan  2674782 2003-10-15
> 10:37 biojava.jar
> -rw-r--r--    1 ahammer  gestelan    93463 2003-10-07
> 17:59 bytecode.jar
> -rw-r--r--    1 ahammer  gestelan    30117 2003-10-07
> 17:59 commons-cli.jar
> -rw-r--r--    1 ahammer  gestelan   145563 2003-10-15
> 10:04 grammars.jar
> -rw-r--r--    1 ahammer  gestelan    46056 2003-10-07
> 17:59 htmlparser.jar
> -rw-r--r--    1 ahammer  gestelan    50962 2005-02-10
> 11:38 MotifSearch.jar
> -rw-r--r--    1 ahammer  gestelan  1808885 2005-02-11
> 11:55 xerces.jar
> ahammer at marchingmen2:~/ext> 
> 
> I don't understard why this doesn't work.  It works
> fine on a windows box.  It makes me think it wouldn't
> work even if I had access to the jre/ext directory.
> 
> Andy
> 
> 
> 		
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