[Biojava-l] location of biojava.jar on a linux system

[David Huen]

On Thursday 10 Feb 2005 19:15, Andy Hammer wrote:
> Hello all.

If you are running the app as a jar, you appear to need to define an env var 
CLASSPATH that has the jars required.  I've never had much joy with 
defining the classpath on the command line itself but that might just be 
incompetence on my part.
>
> I had some apps I wrote with biojava that I wanted to
> run on a linux system.  I do not have root privliges
> and wondered where I could put biojava.jar to make my
> application run.  The name of the app is
> MotifSearch.jar.  I have tried putting bytecode.jar,
> xerces.jar and biojava.jar in the local directory and
> running
>
> >java -classpath . -jar MotifSearch.jar
>
> but I still get the error:
> Exception in thread "main"
> java.lang.NoClassDefFoundError:
> org/biojava/bio/BioException
>
> Any ideas?
> Thanks
>
> Andy
>
>
>
>
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-- 

David Huen, Ph.D.              Email: smh1008 at cus.cam.ac.uk
Dept. of Genetics              Fax  : +44 1223 333992
University of Cambridge        Phone: +44 1223 333982/766748
Cambridge, CB2 3UH
U.K.