[Biojava-l] cvs ant build failure

[mark.schreiber at novartis.com]

Just a reminder to people with CVS accounts (including myself who is 
sometimes guilty of this):

The minimum requirement of CVS is that it will build at all times (using 
JDK1.4.2).
The desirable requirement is that it will build and pass all unit tests. 
This is not a strict requirement for the live distribution but it is good 
to think about what you may have done to break the unit tests.

- Mark





"Richard HOLLAND" <hollandr at gis.a-star.edu.sg>
Sent by: biojava-l-bounces at portal.open-bio.org
12/05/2005 09:42 AM

 
        To:     "Tamas Horvath" <hotafin at gmail.com>
        cc:     biojava-l at biojava.org, (bcc: Mark Schreiber/GP/Novartis)
        Subject:        RE: [Biojava-l] cvs ant build failure


I just checked out the most recent version and found a bug in
EmptyRichAnnotation just as your compiler output indicates. I fixed it. 

But... it still won't compile, but now for a different reason. It seems
that Andreas' check-in of his structure classes over the weekend was
missing the Matrix and SingularValueDecomposition classes. Andreas can
you fix this please?

cheers,
Richard

Richard Holland
Bioinformatics Specialist
GIS extension 8199
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> -----Original Message-----
> From: biojava-l-bounces at portal.open-bio.org 
> [mailto:biojava-l-bounces at portal.open-bio.org] On Behalf Of 
> Tamas Horvath
> Sent: Friday, December 02, 2005 11:09 PM
> To: biojava-l at biojava.org
> Subject: [Biojava-l] cvs ant build failure
> 
> 
> ant package-biojavaBuildfile: build.xml
> init:     [echo] Building biojava-live     [echo] Java 
> Home:/home/hota/programs/java/jdk1.5.0/jre     [echo] JUnit 
> present:                   ${junit.present}     [echo] JUnit 
> supported by Ant:          true     [echo] HSQLDB driver 
> present:           ${sqlDriver.hsqldb}
> prepare:
> prepare-biojava:
> compile-biojava:    [javac] Compiling 93 source files 
> to/data3/installs/biojava-live/ant-build/classes/biojava 
> [javac]/data3/installs/biojava-live/src/org/biojavax/EmptyRich
> Annotation.java:42:org.biojavax.EmptyRichAnnotation is not 
> abstract and does not overrideabstract method 
> getProperties(java.lang.Object) inorg.biojavax.RichAnnotation 
>    [javac] public class EmptyRichAnnotation extends 
> Unchangeable implementsRichAnnotation, Serializable { 
> [javac]        ^    [javac] Note: * uses or overrides a 
> deprecated API.    [javac] Note: Recompile with 
> -Xlint:deprecation for details.    [javac] 1 error
> BUILD FAILED/data3/installs/biojava-live/build.xml:267: 
> Compile failed; see the compilererror output for details.
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