[Biojava-l] Construct a phylogenetic tree

[mark.schreiber at novartis.com]

Hello -

If your on windows you can use a program called TreeView.

There is also a Java package called PAL that can draw and manipulate trees 
and do lots of phylogenitic calculations. Not sure of the web site. Try 
google.

-= Mark





Jan Würthner <jan.wuerthner at uni-duesseldorf.de>
Sent by: biojava-l-bounces at portal.open-bio.org
08/17/2005 07:18 PM

 
        To:     biojava-l at biojava.org
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        Re: [Biojava-l] Construct a phylogenetic tree



Hi Sebastien,

I am using the phylip package:

    http://evolution.genetics.washington.edu/phylip.html

it has nothing to do with BioJava though.

kind regards
Jan


Am Mittwoch, 17. August 2005 11:13 schrieb Sébastien PETIT:
> Hello,
>
> My question is simple : is there a tool which can draw a phylogenetic
> tree?
> The phylogenetic tree is known and it is a tree with brackets, like
> this :
>
> (
> (
> Q6S6K2_PIG_Insulin-like_growth:0.04624,
> Q9GJV5_BOVIN_Insulin-like_grow:0.04655)
>
> :0.03391,
>
> Q6P1M6_HUMAN_Insulin-like_grow:0.08006,
> (
> Q6PE62_MOUSE_Igfbp3_protein__I:0.01882,
> IBP3_RAT_Insulin-like_growth_f:0.02570)
>
> :0.07527);
>
> Thanks for any suggestion...
>
> Sebastien
>
>
>
>
>
>
> 
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-- 
Jan Würthner
Institute for Medical Microbiology
Building 22.21
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Tel. +49 (0) 211 81 12461
URL: www.medmikro.uni-duesseldorf.de
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