[Biojava-l] setting up biojava and running a program for translate

[mark.schreiber at novartis.com]

There is help on setting your classpath here:

http://www.biojava.org/started.html





"Richard HOLLAND" <hollandr at gis.a-star.edu.sg>
Sent by: biojava-l-bounces at portal.open-bio.org
04/25/2005 02:16 PM

 
        To:     "MEENA HARIHARAN" <meena_hariharan at hotmail.com>, <Biojava-l at biojava.org>
        cc:     (bcc: Mark Schreiber/GP/Novartis)
        Subject:        RE: [Biojava-l] setting up biojava and running a program for translate


Include the downloaded jar files on your classpath when running any
programs using them. Otherwise you will get exactly the errors you
mention below.

Richard Holland
Bioinformatics Specialist
GIS extension 8199
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> -----Original Message-----
> From: biojava-l-bounces at portal.open-bio.org 
> [mailto:biojava-l-bounces at portal.open-bio.org] On Behalf Of 
> MEENA HARIHARAN
> Sent: Monday, April 25, 2005 2:06 PM
> To: Biojava-l at biojava.org
> Subject: [Biojava-l] setting up biojava and running a program 
> for translate
> 
> 
> Hi
> 
> I installed jdk1.3.1_15 in c:\jdk1.3.1_15.
> I also downloaded xerces.jar, bytecode-0.91.jar, biojava-1.3.1, and 
> jakarta-regexp.jar
> in C:\biojava\downloads
> 
> When I try to run c:\biojava\Translate.java I get the following errors
> "C:\biojava\Translate.java:1: package org.biojava.bio.symbol 
> does not exist
> import org.biojava.bio.symbol.*;
> 
> C:\biojava\Translate.java:2: package org.biojava.bio.seq does 
> not exist
> import org.biojava.bio.seq.*;
> 
> etc.
> 
> I do I handle import in biojava so that I correct these errors.
> 
> meena
> 
> 
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> 

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