[Biojava-l] java.lang.NoClassDefFoundError error

[Gang Wu]

Another problem is you have to include "c:\bio-java\demos" in your CLASSPATH
and call the TestEmbl as "seq.TestEmbl" because the class package started
from "c:\bio-java\demos\seq". So the command line should be like:

c:\j2sdk1.4.2_04\jre\bin\java -cp CLASSPATH;c:\bio-java\demos seq.TestEmbl
C:\bio-java\demos\seq\AL121903.embl

gang

-----Original Message-----
From: biojava-l-bounces at portal.open-bio.org
[mailto:biojava-l-bounces at portal.open-bio.org]On Behalf Of Selmar
Leeuwenburgh
Sent: Sunday, August 29, 2004 11:30 AM
To: biojava-l at biojava.org
Subject: [Biojava-l] java.lang.NoClassDefFoundError error


Hi,

I have a question. I know there are some messages of this subject in the
list, but I can't find the right answer.

Do someone know why I get java.lang.NoClassDefFoundError error? I get the
same error on my Linux computer with mandrake.


the command:

C:\>c:\j2sdk1.4.2_04\bin\java c:\bio-java\demos\seq\TestEmbl
C:\bio-java\demos\s
eq\AL121903.embl
Exception in thread "main" java.lang.NoClassDefFoundError:
c:\bio-java\demos\seq
\TestEmbl

the content of the ext directory:

 Directory of C:\j2sdk1.4.2_04\jre\lib\ext

29/08/2004  16:24    <DIR>          .
29/08/2004  16:24    <DIR>          ..
29/08/2004  16:11         2,385,919 biojava-1.30-jdk14.jar
29/08/2004  16:24            60,044 bytecode-0.91.jar
22/02/2004  23:18             8,896 dnsns.jar
29/08/2004  16:23            29,871 jakarta-regexp.jar
22/02/2004  23:21            53,247 ldapsec.jar
22/02/2004  23:50           769,335 localedata.jar
29/08/2004  15:58           111,374 sunjce_provider.jar
29/08/2004  16:24         1,783,457 xerces.jar
               8 File(s)      5,202,143 bytes
               2 Dir(s)  10,133,127,168 bytes free

My env variable are

C:\bio-java\demos\seq>set
ALLUSERSPROFILE=C:\Documents and Settings\All Users
APPDATA=C:\Documents and Settings\Selmar\Application Data
CLASSPATH=C:\j2sdk1.4.2_04\jre\lib\ext\biojava-1.30-jdk14.jar;C:\j2sdk1.4.2_
04\j
re\lib\ext\xerces.jar;C:\j2sdk1.4.2_04\jre\lib\ext\bytecode-0.91.jar;C:\j2sd
k1.4
.2_04\jre\lib\ext\jakarta-regexp.jar;
CommonProgramFiles=C:\Program Files\Common Files
COMPUTERNAME=SELMAR
ComSpec=C:\WINDOWS\system32\cmd.exe
HOMEDRIVE=C:
HOMEPATH=\
LOGONSERVER=\\SELMAR
NUMBER_OF_PROCESSORS=2
OS=Windows_NT
Path=C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Program
Files\Co
mmon Files\Adaptec
Shared\System;C:\WINDOWS\system32\nls;C:\WINDOWS\system32\nls
\ENGLISH;C:\Program Files\UltraEdit;C:\Sun\AppServer\bin
PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH
PROCESSOR_ARCHITECTURE=x86
PROCESSOR_IDENTIFIER=x86 Family 15 Model 2 Stepping 9, GenuineIntel
PROCESSOR_LEVEL=15
PROCESSOR_REVISION=0209
ProgramFiles=C:\Program Files
PROMPT=$P$G
SystemDrive=C:
SystemRoot=C:\WINDOWS
TEMP=C:\DOCUME~1\Selmar\LOCALS~1\Temp
TMP=C:\DOCUME~1\Selmar\LOCALS~1\Temp
ULTRAMON_LANGDIR=C:\Program Files\UltraMon\Resources\en
USERDOMAIN=SELMAR
USERNAME=Selmar
USERPROFILE=C:\Documents and Settings\Selmar
windir=C:\WINDOWS


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