[Biojava-l] got identity?

Hongyu Zhang forward at hongyu.org
Sat Jul 31 13:13:45 EDT 2004


Is there any method to get the percentage of identities of BLAST hsps
in Biojava?

Once again, I followed the guide in the "Biojava in anger". Its code
successfully parsed a WU-BLAST result, and printed out the hit
E-value and ID nicely, but when I tried to look for the method to
return HSP identities, I had no luck. It's such a common feature of
BLAST result, so it caught me quite off-guard.

Thanks!

--Hongyu


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