[Biojava-l] 2 problems found in org.biojava.bio.seq.db.biosql code

[Len Trigg]

"Frederik Decouttere" <sherpa at coresoft.be> wrote:
> After doing some tests with the biojava - biosql code I think there are
> 2 (little) bugs in there:
> 
> - when persisting a Sequence which contains a Feature with
> BetweenLocation this Location gets converted to a RangeLocation upon
> retrieval
> 
> - when persisting a Sequence which contains (a) Feature(s) in 2
> different biodatabases an exception is thrown in the ontology code part
> of biojava

I have got as far as inserting your example code into the BioSQL JUnit
test and it replicates the problem perfectly. I think I know what's
going on with the ontology bug, but haven't looked into the Location
one. I probably won't be able to look at it in more detail for a
couple more days though (if anyone wants to jump the gun, I can commit
the test so the tests start failing :-)).


Cheers,
Len.