[Biojava-l] Simple alignment

[Schreiber, Mark]

Robin -
 
How about overloading the constructor?  That way if you provide a TreeMap the result is ordered. If not you get what you get. Many classes are dependent on SimpleAlignment so it may not pay to change it too much.
 
- Mark
 
 
 
-----Original Message----- 
From: Emig, Robin [mailto:Robin.Emig at maxygen.com] 
Sent: Mon 15/09/2003 3:04 p.m. 
To: bio java 
Cc: 
Subject: [Biojava-l] Simple alignment



	        Is there any objection to making SimpleAlignment take a TreeMap instead of a simple Map? The reason is that order of the sequences in the alignment is often of importance. I suppose the alternative is to create a new alignment called OrderedAlignment.
	-Robin
	
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