[Biojava-l] HELP: Relative URI "NCBI_BlastOutput.dtd"; can not be resolved without a base URI.

[Yong Liu]

Hi,

I am new to Biojava. I just checked out biojava-live
from the cvs.biojava, and compiled the whole packages
and demos successfully. I want to run the BlastParser,
but I got the following errors. Can anybody tell me
how I run this program? Thanks very much!

-Yong

%java -classpath .:../biojava.jar blastxml.BlastParser
./blastxml/input.xml

org.xml.sax.SAXParseException: Relative URI
"NCBI_BlastOutput.dtd"; can not be resolved without a
base URI.
        at
org.apache.crimson.parser.Parser2.fatal(Parser2.java:3339)
        at
org.apache.crimson.parser.Parser2.fatal(Parser2.java:3333)
        at
org.apache.crimson.parser.Parser2.resolveURI(Parser2.java:2915)
        at
org.apache.crimson.parser.Parser2.maybeExternalID(Parser2.java:2887)
        at
org.apache.crimson.parser.Parser2.maybeDoctypeDecl(Parser2.java:1276)
        at
org.apache.crimson.parser.Parser2.parseInternal(Parser2.java:623)
        at
org.apache.crimson.parser.Parser2.parse(Parser2.java:333)
        at
org.apache.crimson.parser.XMLReaderImpl.parse(XMLReaderImpl.java:448)
        at
org.biojava.bio.program.sax.blastxml.BlastXMLParserFacade.parse(BlastXMLParserFacade.java:167)
        at blastxml.BlastParser.main(BlastParser.java:47)

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