[Biojava-l] How to combine multiple Sequence objects into a singleSequence object?

[Matthew Pocock]

This is exactly the sort of thing that
ComponentFeature is designed for. I don't know if we
have a user instantiable sequence class that you can
use out of the box - perhaps Assembly is it. I will
take a look monday

Matthew

 --- Keith James <kdj at sanger.ac.uk> wrote: > >>>>>
"Mark" == Schreiber, Mark
> <mark.schreiber at agresearch.co.nz> writes:
> 
>     Mark> Hi - We get asked this a lot.
> Unfortunately there isn't an
>     Mark> easy solution. If you have access to all
> of the files
>     Mark> referenced in the main EMBL file then you
> could write a
>     Mark> simple program to retrieve and open them
> all and then use
>     Mark> something like Edit functions to join them
> together.
> 
> Is this the purpose of Assembly and
> ComponentFeature? I haven't used
> these, but it looks like you can create an aggregate
> sequence. I had a
> brief look at the code and it seems that a current
> limitation is that
> new features cannot be created on the component
> sequences.
> 
> See NewSimpleAssemblyTest in tests which creates a
> SimpleAssembly
> (which isa Sequence) from 6 smaller Sequences.
> 
> Keith
> 
> -- 
> 
> - Keith James <kdj at sanger.ac.uk> Microarray
> Facility, Team 65 -
> - The Wellcome Trust Sanger Institute, Hinxton,
> Cambridge, UK -
> _______________________________________________
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