[Biojava-l] Question about Swiss-Prot parsing

[Schreiber, Mark]

Hi -
 
I think we could do a much better job on SwissProt parsing. Esp with some of the facilities in Biojava-live. Any volunteers with a spare hour or two up there sleaves?
 
- Mark
 

	-----Original Message----- 
	From: Vasa Curcin [mailto:vc100 at doc.ic.ac.uk] 
	Sent: Thu 9/10/2003 12:56 a.m. 
	To: biojava-l at biojava.org 
	Cc: 
	Subject: [Biojava-l] Question about Swiss-Prot parsing
	
	

	Hello,
	
	I am parsing some Swiss-Prot files with Biojava 1.3 and need to put the
	contents into Sequence Collections. It does not crash but there are two
	problems:
	
	1. Each annotation is shown as the tag, followed by a colon and then the
	content, so for example AC :Q9L867. Other parsers seem to be happy to
	convert the tags into meaningful description, is there some inherent
	problem with SWISS-PROT?
	
	2. Features are not recognized in most cases.
	
	Has anyone found workarounds for these.
	
	Cheers,
	Vasa
	
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