[Biojava-l] EMBL full genome retrieval
Gasper Tkacik
gtkacik at Princeton.EDU
Fri Oct 10 10:00:16 EDT 2003
Hi everybody!
I am new to biojava, so this may be a trivial question from a beginner.
Using the following code snippet:
public static void main(String args[])
{
try
{
Registry reg = SystemRegistry.instance();
SequenceDBLite sdb = reg.getDatabase("embl");
Sequence ecoli = sdb.getSequence("U00096");
SeqIOTools.writeEmbl(System.out, ecoli);
} catch (Exception e)
{
System.out.println(e);
}
}
I wanted to get the whole E.coli genome from EMBL database. However, it
turns out that I get only the first out of 400 segments of the DNA. I
tried to search the web foradvice but could find nothing useful. Any
help or at least a reference to where I should look?
Thank you all in advance, Gasper.
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