[Biojava-l] Serialization of SequenceDB obtained from Swiss-Prot

[Schreiber, Mark]

Hi -

I'm not sure serializing an entire SequenceDB is a good idea, however, can you tell me if the serialization is failing on the DB or one of the sequences in it?

- Mark


> -----Original Message-----
> From: Vasa Curcin [mailto:vc100 at doc.ic.ac.uk] 
> Sent: Tuesday, 18 November 2003 11:28 p.m.
> To: biojava-l at biojava.org
> Subject: [Biojava-l] Serialization of SequenceDB obtained 
> from Swiss-Prot
> 
> 
> Hello,
> 
> There seems to be some problem with serializing SequenceDB objects 
> obtained from SwissProtDatabase. The error is:
> 
> java.io.WriteAbortedException: writing aborted; java.io.NotSeria
> lizableException: 
> org.biojava.bio.seq.io.SequenceBuilderBase$TemplateWithChildre
> n
>         at 
> java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1278)
>         at 
> java.io.ObjectInputStream.readObject(ObjectInputStream.java:324)
>         at java.util.HashSet.readObject(HashSet.java:272)
>         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>         at 
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.
> 
> I am using Biojava 1.30, with Mark's patches from a few weeks back. 
> Anyone has an idea?
> 
> Regards,
> Vasa
> 
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> Biojava-l mailing list  -  Biojava-l at biojava.org 
> http://biojava.org/mailman/listinfo/biojava-l
> 
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