[Biojava-l] Problems compiling biojava-live

[Aroul Ramadass]

Hi,

I have the same problem as well...

on linux, java 1.4.0_01-b03 build.

Aroul.



On Fri, 23 May 2003, Sylvain Foisy wrote:

> Hi to all,
>
> I have been having problems compiling biojava-live for that past few days
> now. My ant output is like this:
>
> compile:
>     [javac] Compiling 48 source files to
> /Users/foisys/biojava-live/ant-build/classes/main
>     [javac]
> /Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
> ompiler.java:732: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
> be applied to (boolean)
>     [javac]           useOldMax.add( ByteCode.make_pop2(true));
>     [javac]                                  ^
>     [javac]
> /Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
> ompiler.java:1000: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
> be applied to (boolean)
>     [javac]             ifSmallerThanMax.add( ByteCode.make_pop2 (true));
>     [javac]                                           ^
>     [javac]
> /Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
> ompiler.java:1052: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
> be applied to (boolean)
>     [javac]             scoreIsNaN.add( ByteCode.make_pop2(true));
>     [javac]                                     ^
>     [javac]
> /Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
> ompiler.java:1291: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
> be applied to (boolean)
>     [javac]             ifSmallerThanMax.add( ByteCode.make_pop2 (true));
>     [javac]                                           ^
>     [javac]
> /Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/dp/twohead/DPC
> ompiler.java:1347: make_pop2() in org.biojava.utils.bytecode.ByteCode cannot
> be applied to (boolean)
>     [javac]             scoreIsNaN.add( ByteCode.make_pop2(true));
>     [javac]                                     ^
>     [javac] Note:
> /Users/foisys/biojava-live/ant-build/src/main/org/biojava/bio/seq/io/Genbank
> Format.java uses or overrides a deprecated API.
>     [javac] Note: Recompile with -deprecation for details.
>     [javac] 5 errors
>
> I am using Mac OS X with Java 1.4.1.
>
> Cordially
>
> Sylvain
>
> ===================================================================
> Sylvain Foisy, Ph. D.
> Directeur - operations / Project Manager
> BioneQ - Reseau quebecois de bio-informatique
> U. de Montreal / Genome-Quebec
>
> Adresse postale:
>
> Departement de biochimie
> Pavillon principal
> 2900, boul. Édouard-Montpetit
> Montréal (Québec) H3T 1J4
>
> Tel: (514) 343-6111 x.4066
> Courriel: sylvain.foisy at bioneq.qc.ca
> ===================================================================
>
>
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