[Biojava-l] SeqIOTools.writeFasta method using Sequence object

[Schreiber, Mark]

Hi -

It kind of comes from programing jargon for using something in a
realistic way or in a real setting rather than just testing it. Ie
actually doing something useful with BioJava. You could equally argue
that you might go to the webpage when you are frustrated by our lack of
documentation and need a quick solution ;-)

- Mark


> -----Original Message-----
> From: Takeshi Sasayama [mailto:sasayama at lmi.hitachi-sk.co.jp] 
> Sent: Tuesday, 18 March 2003 3:52 p.m.
> To: Schreiber, Mark; Matthew Pocock
> Cc: biojava-l at biojava.org
> Subject: Re: [Biojava-l] SeqIOTools.writeFasta method using 
> Sequence object
> 
> 
> Hi Mark and Matthew,
> 
> Thank you very much for your replies on this question and my 
> previous question. I could do my job successfully using 
> biojava1.3pre1.
> 
> By the way, I have been wondering why the name of the 
> cookbook page is "BioJava in Anger". Is there any reason for that?
> 
> Takeshi Sasayama
> 
> 
> ----- Original Message -----
> From: "Schreiber, Mark" <mark.schreiber at agresearch.co.nz>
> To: "Takeshi Sasayama" <sasayama at lmi.hitachi-sk.co.jp>; 
> <biojava-l at biojava.org>
> Sent: Tuesday, March 18, 2003 6:55 AM
> Subject: RE: [Biojava-l] SeqIOTools.writeFasta method using 
> Sequence object
> 
> 
> Hi -
> 
> That method is a recent addition to BioJava, you will need to 
> get biojava1.3pre1 from the download site or BioJava live 
> from the CVS server.
> 
> - Mark
> 
> > -----Original Message-----
> > From: Takeshi Sasayama [mailto:sasayama at lmi.hitachi-sk.co.jp]
> > Sent: Monday, 17 March 2003 7:31 p.m.
> > To: biojava-l at biojava.org
> > Subject: [Biojava-l] SeqIOTools.writeFasta method using Sequence 
> > object
> >
> >
> > Hi,
> >
> > I wrote a script(using BioJava 1.22) which reads sequences from 
> > multiple GenBank format files and write part of them in 
> FASTA format, 
> > using
> > SeqIOTools.writeFasta() method. In "BioJava In Anger", it 
> is written 
> > that writeFasta can be used for printing a single sequence 
> like this: 
> > writeFasta(System.out, seq1), but I had an err in this way. 
> I looked 
> > for JavaDoc and Biojava src files but there seems to be no 
> signature 
> > using Sequence object as 2nd argument.
> >
> > Does anyone have suggestion on this?
> > Also any information is welcome.
> > Thanks
> >
> > Takeshi Sasayama
> >
> >
> > _______________________________________________
> > Biojava-l mailing list  -  Biojava-l at biojava.org 
> > http://biojava.org/mailman/listinfo/biojava-l
> >
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