[Biojava-l] Help

[Matthew Pocock]

Hi Hailong,

List is nicer than arrays - use something like this:

List matricies = new ArrayList();

... loop that loads the next matrix in ...
   matricies.add(matrix);
... end of matrix loading loop ...

See java.util.List and java.util.Collection - also, Iterator is your 
friend. The sun web site has a tutorial on collections.

Matthew


Hailong Meng wrote:

> Hi, Mark,
> 
> Thank you very much for your suggestions! I am so excited when I find
> BioJava. It is a wonderful place. Maybe I am new here, it is a little
> bit hard for me to find the classes I want to use. Hopefully, it will
> get better when I stay here a little longer.
> 
> I have one more question. I plan to search a list of motifs against a
> list of sequences. I got motifs from MEME and put all the motif
> matrixes to a file. I guess I need to put all these motif matrixes to
> a array of WeightMatrix. How can I do that?
> 
> Thanks.
> 
> Hailong
> 


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