[Biojava-l] Problems with SAX parsing

[Alexander Churbanov]

   Hello Matthew or Thomas,

   I just use SAX BLAST parser to parse a massive of
BLAST output. Unfortunately this package does a really
poor job in a batch mode. It runs out of memory
because of the recursive self-calls which adversely
affects the heap.
   I know that you have borrowed this from another
team, but are there any ways to fix it, outherwise I
run into strange situation while parsing 18,000 Blast
runs.
   Sincerely,

   Alexander Churbanov

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