[Biojava-l] BioJava 1.3pre1

[Schreiber, Mark]

Also,

There has been major work done on the Annotation API
ABI, RefSeq and Unigene parsing
Serialization seems pretty stable now
Rework of the Phred package to make the Phred Alphabet more sensible and
Phred Sequence much more elegant.
Circular Sequence coordinates/ locations are much better handeled now
and even work!

And ....
Believe it or not the Javadocs are a lot better.

- Mark

> -----Original Message-----
> From: Keith James [mailto:kdj@sanger.ac.uk] 
> Sent: Tuesday, 14 January 2003 11:58 p.m.
> To: Thomas Down; biojava-l@biojava.org
> Subject: Re: [Biojava-l] BioJava 1.3pre1
> 
> 
> >>>>> "Thomas" == Thomas Down <td2@sanger.ac.uk> writes:
>   
>     Thomas>   - Improvements to the handler code for building object
>     Thomas> models from search results (Keith?).  BlastXML support.
> 
> Mostly fixes in the search result arena, I think (aside from 
> now using StAX).
> 
> Also
> 
>    - KMP and regex searching of SymbolLists.
> 
>    - RestrictionEnzyme features with support for managing REBASE
>      flatfiles.
> 
> cheers,
> 
> Keith
> 
> -- 
> 
> - Keith James <kdj@sanger.ac.uk> bioinformatics programming support -
> - Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, UK -
> 
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l@biojava.org 
> http://biojava.org/mailman/listinfo/biojava-l
> 
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