[Biojava-l] Blast Version

Y D Sun Yudong.Sun at newcastle.ac.uk
Tue Dec 23 12:37:48 EST 2003


Hi,

What blast version does BlastLikeSAXParser support? I encounter the
following error when running the sample code of BLAST Result Parser in
Biojava In Anger to parse blast 2.2.5 output:

org.xml.sax.SAXException: Program ncbi-blastp Version 2.2.5 is not
supported by the biojava blast-like parsing framework
        at
org.biojava.bio.program.sax.BlastLikeSAXParser.interpret(BlastLikeSAXPar
ser.java:241)
        at
org.biojava.bio.program.sax.BlastLikeSAXParser.parse(BlastLikeSAXParser.
java:160)

Thanks.

George



More information about the Biojava-l mailing list