[Biojava-l] Can anyone help me with MarkovModels?

[Oscar Lopes]

Thanks!!

My problem probabilly is somewhere in the transitions distributions.
Instead of setting the weights myself, I set random
values using DistributionTools. Now it works fine. Maybe I forgot
something important and didn't noticed...

By the way, is there any tool to check if a MarkovModel is valid or if all
the distributions have their weights set?


 Oscar Lopes

 --
 Oscar Manuel Baptista Lopes - oscar at gauss.inesc.pt
 Knowledge Discovery & BioInformatics - http://algos.inesc-id.pt/kdbio/
 Departamento Engenharia Informatica - http://www.dei.ist.utl.pt/
 Instituto Superior Tecnico - http://www.ist.utl.pt/


On Wed, 23 Apr 2003, Schreiber, Mark wrote:

> Hi -
>
> It sounds somewhat like some of you emmission or transition distributions do not have weights set. You can test this by setting a small nullmodel weight in the ModelTrainer before training. This will make sure none of the values is NaN.
>
> If that doesn't work try posting a stack trace to the list.
>
> - Mark
>
>
>
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