[Biojava-l] ssaha

[Schreiber, Mark]

Hi -
 
I have been using the ssaha package in biojava and it's really great, good work guys!!
 
I have one minor question, Am I correct in assuming that hits are reported only if a segment from the query sequence exactly matches a word in the seqstore? Does ssaha allow for partial matches?
 
- Mark
 

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