[Biojava-l] "packed" SymbolLists?

Schreiber, Mark mark.schreiber@agresearch.co.nz
Thu, 24 Oct 2002 11:34:40 +1300


Hi -

There is a PackedSymbolList and a PackedDNASymbolList in
org.biojava.bio.symbol. Can't say I've used them but I think they
operate pretty much the same as normal SymbolLists.

- Mark


> -----Original Message-----
> From: Dave Barkan [mailto:dbarkan@snowball.pcbi.upenn.edu] 
> Sent: Thursday, 24 October 2002 11:24 a.m.
> To: biojava-l@biojava.org
> Subject: [Biojava-l] "packed" SymbolLists?
> 
> 
> Hey all,
> 
> I saw in the tutorial on the Biojava home page that it is 
> possible to implement a "packed" symbolList that only uses 
> 2-4 bits per nucleotide. Is there a class available that 
> implements this yet?  (If not, what is the reasoning behind 
> this and would it be something I could easily set up and give 
> back to the community?)
> 
> Thanks,
> dave
> 
> _______________________________________________
> Biojava-l mailing list  -  Biojava-l@biojava.org 
> http://biojava.org/mailman/listinfo/biojava-l
> 
=======================================================================
Attention: The information contained in this message and/or attachments
from AgResearch Limited is intended only for the persons or entities
to which it is addressed and may contain confidential and/or privileged
material. Any review, retransmission, dissemination or other use of, or
taking of any action in reliance upon, this information by persons or
entities other than the intended recipients is prohibited by AgResearch
Limited. If you have received this message in error, please notify the
sender immediately.
=======================================================================