[Biojava-l] Genbank to Fasta Format
satya pasupuleti
satya_pasupuleti@hotmail.com
Sun, 20 Oct 2002 17:21:23 -0500
Hello :
I converted a Genbank file to Fasta format using biojava , however the
resulting fasta file is missing the description line. Any clues?
Here are the sample Genbank file i used and the resulting Fasta file.
LOCUS AAU03518 237 bp DNA PLN 04-FEB-1995
DEFINITION Aspergillus awamori internal transcribed spacer 1 (ITS1) and 18S
rRNA and 5.8S rRNA genes, partial sequence.
ACCESSION U03518
BASE COUNT 41 a 77 c 67 g 52 t
ORIGIN 1 aacctgcgga aggatcatta ccgagtgcgg gtcctttggg cccaacctcc catccgtgtc
61 tattgtaccc tgttgcttcg gcgggcccgc cgcttgtcgg ccgccggggg ggcgcctctg
121 ccccccgggc ccgtgcccgc cggagacccc aacacgaaca ctgtctgaaa gcgtgcagtc
181 tgagttgatt gaatgcaatc agttaaaact ttcaacaatg gatctcttgg ttccggc
//
Fasta file:
>U03518
aacctgcggaaggatcattaccgagtgcgggtcctttgggcccaacctcccatccgtgtc
tattgtaccctgttgcttcggcgggcccgccgcttgtcggccgccgggggggcgcctctg
ccccccgggcccgtgcccgccggagaccccaacacgaacactgtctgaaagcgtgcagtc
tgagttgattgaatgcaatcagttaaaactttcaacaatggatctcttggttccggc
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