[Biojava-l] GCC Sequence Format (again...)

[Schreiber, Mark]

Hi -

I for one would be keen to see a GCG reader.

If you like I could give you a hand, I have had some experience with the
biojava seqIO.

- Mark

> -----Original Message-----
> From: Andrew Macgregor [mailto:andrew@anatomy.otago.ac.nz] 
> Sent: Wednesday, 16 October 2002 1:27 p.m.
> To: BioJava
> Subject: [Biojava-l] GCC Sequence Format (again...)
> 
> 
> Hi all,
> 
> As a learning exercise and to do a bit of tinkering with 
> BioJava I have partially converted a copy of FastaFormat.java 
> to GCGFormat.java. This allows me to write out to a file in 
> GCC sequence format from BioJava. (It's not perfect yet 
> though.) This is all I need it to do for the task in hand.
> 
> However, if there is interest I could work on making it read 
> GCG files as well and then put the result back into biojava, 
> with these caveats:
> 
> i. This is just a learning exercise for me, so the Java might 
> not be the slickest you'll ever see :)
> 
> ii. I'd need some input from anyone that used it, as I have 
> only tested it on my own stuff. I'd also need input on 
> writing a test for it etc.
> 
> iii. Mostly the code is just a copy/port of the bioperl 
> GCG.pm module by Lincoln Stein and Ewan Birney, so I'd have 
> to check with them that is was alright by them.
> 
> Cheers, Andrew.
> 
> 
> 
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> 
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