[Biojava-l] BioSQL implementation bugs

[Simon Foote]

I've been messing with the BioSQL implementation and have found a couple 
of bugs.  Both are the result of the term_name in the ontology_term 
table being a fixed length char (255).

1)  The feature.byType() method gives the 255 char string, thus if you 
want to filter by, for example "cds", it fails unless you put a trim() 
on the string, but no sure where this needs to go for the filter.

2) Same thing happens with keys for the getAnnotation().getProperty() 
method.

I hope that makes sense.  
As for populating the database, it works great.  I've dumped a couple of 
bacterial genome genbank files into it without any troubles.

Cheers,
Simon Foote

-- 
Bioinformatics Specialist
Institute for Biological Sciences
National Research Council of Canada
[T] 613-991-4342  [F] 613-952-9092